Publications

Author

Emre Anakok

Interpretability of Graph Neural Networks to Assess Effects of Global Change Drivers on Ecological Networks

Citizen Science

Ecological network

Graph Neural Network

Hilbert-Schmidt Independence Criterion

Sampling Effect

Feature Importance

We explore existing methods for interpreting GNNs in order to highlight the effects of various environmental covariates on pollination network connectivity.

Emre Anakok, Pierre Barbillon, Colin Fontaine, Elisa Thebault

Disentangling the structure of ecological bipartite networks from observation processes

Latent Block Model

Sampling Effect

Stochastic Expectation Maximization

Nestedness

Modularity

A new model for network analysis.

Emre Anakok, Pierre Barbillon, Colin Fontaine, Elisa Thebault

Bipartite Graph Variational Auto-Encoder with Fair Latent Representation to Account for Sampling Bias in Ecological Networks

Citizen Science

Ecological network

Graph Neural Network

Hilbert-Schmidt Independence Criterion

Sampling Effect

Translating the fairness framework commonly considered in sociology in order to address sampling bias in ecology using graph embeddings.

Emre Anakok, Pierre Barbillon, Colin Fontaine, Elisa Thebault

Impact of the Ileal Microbiota on Surgical Site Infections in Crohn’s Disease: A Nationwide Prospective Cohort

Random forest

Gut microbiota

Crohn’s disease

Prediction

The objective of this study was to assess the impact of the gut microbiota on surgical site infection in Crohn’s disease.

Emre Anakok, Clément Julien